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1. About CMS 2.0
2. Installation
3. Command line tools
4. Sample workflow
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Composite of Multiple Signals: tests for selection in meiotically recombinant populations
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Composite of Multiple Signals: tests for selection in meiotically recombinant populations
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Contents
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1. About CMS 2.0
1.1. Background
1.2. Coalescent simulations
2. Installation
3. Command line tools
3.1. scans.py
3.2. cms_modeller.py
3.3. likes_from_model.py
3.4. composite.py
4. Sample workflow
4.1. Preliminary considerations
4.2. Data formatting
4.3. Demographic modeling
4.4. Calculating selection statistics
4.5. Combining scores
4.6. Identifying regions
4.7. Localizing signals
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