Composite of Multiple Signals: tests for selection in meiotically recombinant populations

Contents

• 1. About CMS 2.0
  • 1.1. Background
  • 1.2. Coalescent simulations
• 2. Installation
  • 2.1. System dependencies
  • 2.2. Manual Installation
• 3. Command line tools
  • 3.1. scans.py
  • 3.2. cms_modeller.py
  • 3.3. likes_from_model.py
  • 3.4. composite.py
• 4. Sample workflow
  • 4.1. Preliminary considerations
  • 4.2. Data formatting
  • 4.3. Demographic modeling
  • 4.4. Calculating selection statistics
  • 4.5. Combining scores
  • 4.6. Identifying regions
  • 4.7. Localizing signals